STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44392.1COG3047 Outer membrane protein W. (262 aa)    
Predicted Functional Partners:
EDM43712.1
COG3278 Cbb3-type cytochrome oxidase, subunit 1; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.946
EDM42984.1
COG1596 Periplasmic protein involved in polysaccharide export.
  
  
  0.923
EDM44185.1
COG0457 FOG: TPR repeat.
 
     0.776
EDM45682.1
Hypothetical protein.
  
     0.775
EDM43040.1
COG5651 PPE-repeat proteins.
  
     0.775
EDM45027.1
COG4083 Predicted membrane protein.
  
     0.773
EDM42952.1
Glycosyl transferase, group 1; COG0438 Glycosyltransferase.
  
     0.770
EDM45272.1
TPR-repeat-containing protein; COG0457 FOG: TPR repeat.
  
     0.763
EDM44394.1
Hypothetical protein; COG4257 Streptogramin lyase.
 
     0.761
EDM43573.1
Hypothetical protein.
  
     0.760
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.