Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44394.1Hypothetical protein; COG4257 Streptogramin lyase. (783 aa)    
Predicted Functional Partners:
recO
DNA repair protein; Involved in DNA repair and RecF pathway recombination.
       0.809
EDM44396.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.787
EDM44224.1
COG1843 Flagellar hook capping protein.
  
     0.775
EDM43067.1
Hypothetical protein.
  
     0.775
EDM44324.1
Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.773
EDM42949.1
Hypothetical protein; COG2067 Long-chain fatty acid transport protein.
  
     0.771
EDM43811.1
Outer membrane protein; COG0419 ATPase involved in DNA repair.
  
     0.768
EDM44392.1
COG3047 Outer membrane protein W.
 
     0.761
EDM44888.1
Hypothetical protein.
  
     0.746
EDM43573.1
Hypothetical protein.
  
     0.745
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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