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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44396.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (802 aa)    
Predicted Functional Partners:
recO
DNA repair protein; Involved in DNA repair and RecF pathway recombination.
       0.787
EDM44394.1
Hypothetical protein; COG4257 Streptogramin lyase.
       0.783
EDM44665.1
Hypothetical protein; COG4409 Neuraminidase (sialidase).
  
     0.661
EDM44543.1
Glycosyl hydrolase, BNR repeat.
  
     0.656
EDM44393.1
COG0334 Glutamate dehydrogenase/leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.648
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
   
  0.588
EDM45683.1
Hypothetical protein.
   
  0.588
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
   
  0.588
EDM44345.1
Hypothetical protein; COG4409 Neuraminidase (sialidase).
  
     0.583
EDM44970.1
Secretion protein HlyD; COG0845 Membrane-fusion protein.
  
     0.547
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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