Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM44403.1Hypothetical protein; COG3409 Putative peptidoglycan-binding domain-containing protein. (222 aa)    
Predicted Functional Partners:
EDM44518.1
Hypothetical protein.
  
     0.670
EDM43080.1
COG0860 N-acetylmuramoyl-L-alanine amidase.
    
 0.599
EDM43878.1
beta-N-acetylglucosaminidase; COG1472 Beta-glucosidase-related glycosidases.
     
 0.576
EDM43086.1
B-glycosidase, glycoside hydrolase family 3 protein; COG1472 Beta-glucosidase-related glycosidases.
     
 0.576
EDM44355.1
Putative carboxypeptidase; COG1619 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF.
     
  0.547
EDM44474.1
Hypothetical protein; COG1388 FOG: LysM repeat.
    
 0.534
EDM45034.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
     
 0.520
EDM45347.1
Hypothetical protein.
     
 0.520
EDM43759.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
     
 0.520
EDM44184.1
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; COG0773 UDP-N-acetylmuramate-alanine ligase.
     
  0.499
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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