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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44451.1MATE efflux family protein; COG0534 Na+-driven multidrug efflux pump. (444 aa)    
Predicted Functional Partners:
EDM44450.1
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.768
EDM43369.1
COG1562 Phytoene/squalene synthetase.
   
   0.652
EDM44448.1
Hypothetical protein; COG0210 Superfamily I DNA and RNA helicases.
       0.597
EDM44449.1
COG1073 Hydrolases of the alpha/beta superfamily.
       0.592
rpsA
COG0539 Ribosomal protein S1.
   
    0.534
EDM44447.1
OmpA domain protein; COG3047 Outer membrane protein W.
       0.440
EDM44205.1
Glycine dehydrogenase.
  
     0.414
EDM45443.1
Uncharacterized membrane protein; COG0534 Na+-driven multidrug efflux pump.
  
     0.414
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
     
 0.412
EDM44452.1
Hypothetical protein.
       0.411
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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