Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
EDM44458.1COG3279 Response regulator of the LytR/AlgR family. (249 aa)    
Predicted Functional Partners:
EDM44459.1
Possible sensor protein; COG0457 FOG: TPR repeat.
 
  0.952
EDM44460.1
Putative two-component regulator sensor kinase; COG0457 FOG: TPR repeat.
 
  0.899
EDM44461.1
GGDEF domain protein; COG3292 Predicted periplasmic ligand-binding sensor domain.
 
  0.872
EDM45242.1
Possible sensor protein; COG0457 FOG: TPR repeat.
 
  0.836
EDM44135.1
Signaling protein without kinase domain; COG3275 Putative regulator of cell autolysis.
 
  0.828
EDM42857.1
Two-component sensor histidine kinase; COG3275 Putative regulator of cell autolysis.
 
  0.822
EDM44681.1
Hypothetical protein; COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
  
  0.819
EDM45685.1
Possible sensor protein; COG0457 FOG: TPR repeat.
 
  0.812
EDM44399.1
Histidine kinase DhkJ; COG3292 Predicted periplasmic ligand-binding sensor domain.
  
  0.768
EDM44292.1
Transcriptional regulator; COG0784 FOG: CheY-like receiver.
  
     0.734
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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