Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDM44459.1Possible sensor protein; COG0457 FOG: TPR repeat. (647 aa)    
Predicted Functional Partners:
EDM44458.1
COG3279 Response regulator of the LytR/AlgR family.
 
  0.952
EDM45686.1
COG3279 Response regulator of the LytR/AlgR family.
 
  0.829
EDM44398.1
COG3279 Response regulator of the LytR/AlgR family.
 
  0.828
EDM43205.1
Two-component system response regulator protein; COG3279 Response regulator of the LytR/AlgR family.
 
  0.828
EDM44677.1
COG3279 Response regulator of the LytR/AlgR family.
  
  0.826
EDM44134.1
Putative two-component system response regulator; COG3279 Response regulator of the LytR/AlgR family.
 
  0.824
EDM42858.1
COG3279 Response regulator of the LytR/AlgR family.
 
  0.810
EDM44292.1
Transcriptional regulator; COG0784 FOG: CheY-like receiver.
 
  0.772
EDM44457.1
Hypothetical protein.
       0.499
EDM44460.1
Putative two-component regulator sensor kinase; COG0457 FOG: TPR repeat.
 
    
0.492
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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