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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM44463.1COG4886 Leucine-rich repeat (LRR) protein. (1196 aa)    
Predicted Functional Partners:
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
    
  0.645
EDM43080.1
COG0860 N-acetylmuramoyl-L-alanine amidase.
   
 
  0.589
EDM43291.1
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
  
  
  0.516
EDM43878.1
beta-N-acetylglucosaminidase; COG1472 Beta-glucosidase-related glycosidases.
     
 0.500
EDM43086.1
B-glycosidase, glycoside hydrolase family 3 protein; COG1472 Beta-glucosidase-related glycosidases.
     
 0.500
EDM44739.1
COG0572 Uridine kinase.
  
  
  0.500
EDM44462.1
Hypothetical protein.
       0.473
EDM45441.1
Hypothetical protein.
 
  
  0.454
EDM42854.1
Hypothetical protein; COG2951 Membrane-bound lytic murein transglycosylase B.
 
  
  0.415
EDM45628.1
COG5651 PPE-repeat proteins.
  
  
  0.411
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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