Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDM45259.1COG1664 Integral membrane protein CcmA involved in cell shape determination. (132 aa)    
Predicted Functional Partners:
EDM45260.1
Hypothetical protein.
       0.809
EDM45261.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
       0.806
EDM45258.1
Gliding motility-related protein; COG0457 FOG: TPR repeat.
       0.742
EDM45718.1
Putative peptidase; COG0739 Membrane proteins related to metalloendopeptidases.
 
     0.725
EDM45351.1
Putative peptidase; COG0739 Membrane proteins related to metalloendopeptidases.
 
     0.644
atpB
ATP synthase, subunit A (H(+)-transporting two-sector ATPase); Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
       0.616
EDM43163.1
Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.605
EDM45706.1
COG2982 Uncharacterized protein involved in outer membrane biogenesis.
  
     0.553
atpE
Hypothetical protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
       0.544
EDM45477.1
Peptidase, M23/M37 family protein; COG0739 Membrane proteins related to metalloendopeptidases.
 
     0.482
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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