STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45272.1TPR-repeat-containing protein; COG0457 FOG: TPR repeat. (454 aa)    
Predicted Functional Partners:
EDM45274.1
Putative peptidase; COG4942 Membrane-bound metallopeptidase.
   
   0.894
EDM45273.1
Hypothetical protein.
 
     0.833
ribB
Bifunctional protein: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.771
EDM44392.1
COG3047 Outer membrane protein W.
  
     0.763
EDM45608.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.754
EDM45372.1
Possible capK protein; COG1541 Coenzyme F390 synthetase.
  
     0.748
EDM45682.1
Hypothetical protein.
  
     0.748
EDM44882.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.743
EDM44886.1
Hypothetical protein.
  
     0.730
EDM45027.1
COG4083 Predicted membrane protein.
  
     0.724
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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