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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45272.1TPR-repeat-containing protein; COG0457 FOG: TPR repeat. (454 aa)    
Predicted Functional Partners:
EDM45274.1
Putative peptidase; COG4942 Membrane-bound metallopeptidase.
   
   0.893
EDM45273.1
Hypothetical protein.
 
    0.819
EDM44392.1
COG3047 Outer membrane protein W.
  
     0.763
EDM45608.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.754
EDM45372.1
Possible capK protein; COG1541 Coenzyme F390 synthetase.
  
     0.748
EDM45682.1
Hypothetical protein.
  
     0.748
EDM44882.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.743
EDM44886.1
Hypothetical protein.
  
     0.730
EDM45027.1
COG4083 Predicted membrane protein.
  
     0.724
EDM43040.1
COG5651 PPE-repeat proteins.
  
     0.724
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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