STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45276.1Carboxymuconolactone decarboxylase. (196 aa)    
Predicted Functional Partners:
EDM44227.1
Hypothetical protein.
  
     0.605
EDM44205.1
Glycine dehydrogenase.
  
     0.586
EDM43519.1
Redoxin domain protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.558
EDM45275.1
COG0608 Single-stranded DNA-specific exonuclease.
       0.556
EDM42931.1
COG0015 Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
  0.499
EDM42815.1
Hypothetical protein.
     
  0.475
EDM43746.1
COG0222 Ribosomal protein L7/L12.
  
     0.454
EDM43621.1
Hypothetical protein.
  
     0.412
EDM45165.1
Hypothetical protein; COG1393 Arsenate reductase and related proteins, glutaredoxin family; Belongs to the ArsC family.
  
     0.404
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.