STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45323.1Hypothetical protein; COG0459 Chaperonin GroEL (HSP60 family). (223 aa)    
Predicted Functional Partners:
EDM43466.1
Hypothetical protein; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases.
  
     0.727
EDM45510.1
Hypothetical protein.
  
     0.671
EDM43723.1
Hypothetical protein; COG2017 Galactose mutarotase and related enzymes.
  
     0.575
EDM43724.1
Hypothetical protein.
  
     0.562
EDM45324.1
Hypothetical protein; COG1280 Putative threonine efflux protein.
       0.537
EDM45658.1
Hypothetical protein; COG0018 Arginyl-tRNA synthetase.
  
     0.535
EDM42808.1
Thrombospondin type 3 repeat family protein/Calx-beta domain protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.516
rnr
Exoribonuclease II; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
  
    0.501
EDM43063.1
Hypothetical protein.
 
 
  0.491
EDM43064.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
 
     0.491
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.