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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45324.1Hypothetical protein; COG1280 Putative threonine efflux protein. (240 aa)    
Predicted Functional Partners:
EDM43076.1
Hypothetical protein.
  
     0.651
EDM44978.1
Formiminoglutamase-related protein; COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
  
     0.594
EDM45343.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.574
EDM44436.1
Hypothetical protein.
  
     0.569
EDM45694.1
Hypothetical protein; COG0517 FOG: CBS domain.
  
     0.562
EDM44690.1
COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
  
     0.540
EDM44974.1
Hypothetical protein.
  
     0.535
EDM44037.1
Hypothetical protein.
  
     0.526
EDM43758.1
Hypothetical protein.
  
     0.525
EDM43484.1
LysM-repeat protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
 
 
   0.524
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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