STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gltXglutamyl-tRNA synthetase; COG0477 Permeases of the major facilitator superfamily. (262 aa)    
Predicted Functional Partners:
EDM43574.1
Hypothetical protein; COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor).
  
     0.502
EDM45567.1
Putative Oxidoreductase, FAD-binding protein; COG3182 Uncharacterized iron-regulated membrane protein.
 
     0.500
EDM43352.1
Beta-lactamase; COG0457 FOG: TPR repeat.
  
     0.496
EDM45335.1
Hypothetical protein.
       0.475
EDM45336.1
Hypothetical protein.
       0.475
EDM45337.1
Hypothetical protein.
       0.475
EDM45333.1
COG1680 Beta-lactamase class C and other penicillin binding proteins.
       0.463
EDM45566.1
Hypothetical protein.
  
     0.444
EDM45565.1
Hypothetical protein; COG0666 FOG: Ankyrin repeat.
  
     0.429
EDM45260.1
Hypothetical protein.
  
     0.428
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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