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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltXglutamyl-tRNA synthetase; COG0477 Permeases of the major facilitator superfamily. (262 aa)    
Predicted Functional Partners:
EDM44399.1
Histidine kinase DhkJ; COG3292 Predicted periplasmic ligand-binding sensor domain.
  
  0.604
EDM45242.1
Possible sensor protein; COG0457 FOG: TPR repeat.
  
  0.604
EDM43574.1
Hypothetical protein; COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor).
  
     0.502
EDM45567.1
Putative Oxidoreductase, FAD-binding protein; COG3182 Uncharacterized iron-regulated membrane protein.
 
     0.499
EDM43352.1
Beta-lactamase; COG0457 FOG: TPR repeat.
  
     0.496
EDM45221.1
COG0642 Signal transduction histidine kinase.
    
 0.475
EDM45335.1
Hypothetical protein.
       0.475
EDM45336.1
Hypothetical protein.
       0.475
EDM45337.1
Hypothetical protein.
       0.475
EDM45333.1
COG1680 Beta-lactamase class C and other penicillin binding proteins.
       0.463
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.