STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45351.1Putative peptidase; COG0739 Membrane proteins related to metalloendopeptidases. (288 aa)    
Predicted Functional Partners:
EDM45259.1
COG1664 Integral membrane protein CcmA involved in cell shape determination.
 
     0.644
EDM43163.1
Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.621
EDM45417.1
COG5009 Membrane carboxypeptidase/penicillin-binding protein.
  
     0.584
tatA
Hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.533
EDM43080.1
COG0860 N-acetylmuramoyl-L-alanine amidase.
  
   
 0.525
EDM45352.1
Auxin-regulated protein.
       0.469
EDM43653.1
COG2177 Cell division protein; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
    0.429
EDM45353.1
Hypothetical protein.
       0.402
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.