STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45365.1Hypothetical protein; COG3307 Lipid A core - O-antigen ligase and related enzymes. (172 aa)    
Predicted Functional Partners:
EDM45367.1
Glycosyltransferase, group 1 family protein; COG0438 Glycosyltransferase.
  
 
  0.792
EDM45366.1
Hypothetical membrane-anchored protein; COG3867 Arabinogalactan endo-1,4-beta-galactosidase.
       0.773
EDM45368.1
Probable nucleotide sugar dehydrogenase; COG1004 Predicted UDP-glucose 6-dehydrogenase.
  
  
 0.628
EDM43544.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.570
EDM44710.1
Hypothetical protein; COG0859 ADP-heptose:LPS heptosyltransferase.
  
 
 0.569
EDM45364.1
Hypothetical protein.
       0.565
EDM45370.1
Glycosyltransferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.561
EDM45360.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
    
  0.469
hisB
Imidazole glycerol-phosphate dehydratase/histidinol phosphatase; COG0241 Histidinol phosphatase and related phosphatases; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family.
    
  0.463
EDM42955.1
Hypothetical protein; COG3307 Lipid A core - O-antigen ligase and related enzymes.
    
  0.454
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.