Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45372.1Possible capK protein; COG1541 Coenzyme F390 synthetase. (437 aa)    
Predicted Functional Partners:
EDM42952.1
Glycosyl transferase, group 1; COG0438 Glycosyltransferase.
 
     0.778
EDM44392.1
COG3047 Outer membrane protein W.
  
     0.752
EDM45272.1
TPR-repeat-containing protein; COG0457 FOG: TPR repeat.
  
     0.748
EDM44279.1
Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.747
EDM45682.1
Hypothetical protein.
  
     0.747
EDM43040.1
COG5651 PPE-repeat proteins.
  
     0.732
EDM42984.1
COG1596 Periplasmic protein involved in polysaccharide export.
  
     0.714
EDM42983.1
Tyrosine-protein kinase; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
     0.709
EDM45027.1
COG4083 Predicted membrane protein.
  
     0.681
EDM44185.1
COG0457 FOG: TPR repeat.
  
     0.657
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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