STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDM45380.1Polyunsaturated fatty acid synthase PfaA; COG3321 Polyketide synthase modules and related proteins. (1539 aa)    
Predicted Functional Partners:
EDM45379.1
Polyunsaturated fatty acid synthase PfaA; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 0.996
EDM45377.1
2-nitropropane dioxygenase, NPD; COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
 0.992
EDM45382.1
Surfactin biosynthesis-related protein, SFP; COG2091 Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
 
 0.991
EDM44499.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 0.990
EDM43551.1
COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
 0.989
EDM43597.1
Bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; COG1012 NAD-dependent aldehyde dehydrogenases.
    
 0.987
EDM43971.1
Putative O-succinylbenzoate--CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.987
EDM45378.1
Hypothetical protein; COG3321 Polyketide synthase modules and related proteins; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
0.984
EDM43112.1
COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
0.969
hemL
HemL; COG0001 Glutamate-1-semialdehyde aminotransferase.
   
 0.968
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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