STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45388.1Hypothetical protein. (470 aa)    
Predicted Functional Partners:
EDM45389.1
Hypothetical protein; COG2378 Predicted transcriptional regulator.
 
     0.862
EDM43549.1
COG0513 Superfamily II DNA and RNA helicases.
   
  0.676
EDM43863.1
RNA helicase; COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
   
  0.676
EDM43194.1
ATP-dependent RNA helicase, DEAD/DEAH box family protein; COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
   
  0.676
EDM44467.1
COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
   
  0.676
EDM44477.1
COG0513 Superfamily II DNA and RNA helicases.
   
  0.676
EDM44525.1
COG0513 Superfamily II DNA and RNA helicases.
   
  0.676
EDM44198.1
Hypothetical protein; COG1510 Predicted transcriptional regulators; Belongs to the GbsR family.
  
     0.541
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
     
  0.520
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 
  0.468
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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