STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45392.1Gluconokinase and phosphogluconate dehydrogenase (decarboxylating) fusion; COG3265 Gluconate kinase; Belongs to the 6-phosphogluconate dehydrogenase family. (628 aa)    
Predicted Functional Partners:
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 0.962
EDM45158.1
Ribulose-phosphate 3-epimerase (D-ribulose-5-phosphate 3-epimerase); COG0036 Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 0.954
ilvD
COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; Belongs to the IlvD/Edd family.
  
 0.939
EDM43969.1
Chloromuconate cycloisomerase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.
    
 0.921
EDM45395.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
 0.908
EDM45320.1
COG0698 Ribose 5-phosphate isomerase RpiB.
    
 0.889
EDM45393.1
Natural resistance-associated macrophage protein; COG1914 Mn2+ and Fe2+ transporters of the NRAMP family.
 
    0.869
EDM45405.1
COG1609 Transcriptional regulators.
 
 
 0.846
pgi
COG0166 Glucose-6-phosphate isomerase; Belongs to the GPI family.
 
 
 0.842
EDM43253.1
Oxidoreductase, Gfo/Idh/MocA family protein; COG0673 Predicted dehydrogenases and related proteins.
    
 0.840
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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