STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45396.1Heparinase II/III-like protein. (762 aa)    
Predicted Functional Partners:
EDM45390.1
Poly(beta-D-mannuronate) lyase; COG3210 Large exoproteins involved in heme utilization or adhesion.
 
  
  0.963
EDM45397.1
Putative pectin degradation protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
     0.921
EDM45391.1
Poly(beta-D-mannuronate) lyase.
 
  
  0.913
EDM45394.1
Alginate lyase.
 
  
  0.910
EDM45400.1
COG2186 Transcriptional regulators.
 
     0.844
EDM45401.1
Putative hexuronate transport protein (MFS family); COG0477 Permeases of the major facilitator superfamily.
 
    0.842
EDM45402.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.774
EDM45398.1
Putative outer membrane protein, probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.698
EDM45399.1
Putative outer membrane protein, probably involved in nutrient binding.
 
  
  0.582
EDM45395.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.576
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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