STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45398.1Putative outer membrane protein, probably involved in nutrient binding; COG1629 Outer membrane receptor proteins, mostly Fe transport. (1060 aa)    
Predicted Functional Partners:
EDM45399.1
Putative outer membrane protein, probably involved in nutrient binding.
 
   
 0.944
EDM45394.1
Alginate lyase.
 
 
   0.852
EDM45391.1
Poly(beta-D-mannuronate) lyase.
 
 
   0.842
EDM45393.1
Natural resistance-associated macrophage protein; COG1914 Mn2+ and Fe2+ transporters of the NRAMP family.
 
     0.758
EDM44507.1
Hypothetical secreted protein.
  
  
  0.737
EDM45400.1
COG2186 Transcriptional regulators.
 
    0.718
EDM45396.1
Heparinase II/III-like protein.
 
     0.698
EDM45390.1
Poly(beta-D-mannuronate) lyase; COG3210 Large exoproteins involved in heme utilization or adhesion.
 
     0.666
EDM44810.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
     
  0.612
EDM42918.1
CHU large protein; uncharacterized.
  
    0.604
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.