STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45401.1Putative hexuronate transport protein (MFS family); COG0477 Permeases of the major facilitator superfamily. (432 aa)    
Predicted Functional Partners:
EDM45400.1
COG2186 Transcriptional regulators.
 
   
 0.861
EDM45402.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.850
EDM45396.1
Heparinase II/III-like protein.
 
    0.842
EDM45390.1
Poly(beta-D-mannuronate) lyase; COG3210 Large exoproteins involved in heme utilization or adhesion.
 
    0.826
EDM45397.1
Putative pectin degradation protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
     0.781
EDM45404.1
COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase.
 
   
 0.671
EDM45403.1
PfkB domain protein; COG0524 Sugar kinases, ribokinase family.
 
   
 0.666
EDM45391.1
Poly(beta-D-mannuronate) lyase.
 
     0.580
EDM45405.1
COG1609 Transcriptional regulators.
 
   
 0.533
EDM45394.1
Alginate lyase.
 
     0.504
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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