STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45415.1Hypothetical protein; COG1774 Uncharacterized homolog of PSP1. (432 aa)    
Predicted Functional Partners:
EDM45416.1
Putative gliding motility protein.
       0.809
rny
Hypothetical protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
    0.768
EDM45417.1
COG5009 Membrane carboxypeptidase/penicillin-binding protein.
       0.527
recR
Recombination protein recR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
      0.525
EDM44224.1
COG1843 Flagellar hook capping protein.
    
   0.521
EDM43659.1
COG1587 Uroporphyrinogen-III synthase.
  
     0.496
EDM43717.1
Putative chorismate mutase; COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase.
  
     0.479
EDM45418.1
COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
       0.432
EDM45419.1
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
       0.425
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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