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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45456.1Zinc ABC transporter, periplasmic zinc-binding protein; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family. (303 aa)    
Predicted Functional Partners:
EDM45459.1
Hypothetical protein; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
 
 0.999
EDM45457.1
Zinc ABC transporter, ATP-binding protein; COG1121 ABC-type Mn/Zn transport systems, ATPase component.
 
 
 0.998
EDM45458.1
Hypothetical protein; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
 
 0.997
EDM45455.1
COG1321 Mn-dependent transcriptional regulator.
  
 
 0.901
EDM44494.1
Putative regulatory protein (nitrile hydratase activator like); COG0523 Putative GTPases (G3E family).
  
  
 0.710
EDM43412.1
iron(III) ABC transporter, ATP-binding protein, putative; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
  
 
 0.678
EDM45109.1
COG1321 Mn-dependent transcriptional regulator.
  
 
 0.651
EDM45460.1
Hypothetical protein.
       0.618
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.603
rpmB
COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.597
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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