Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45475.1Hypothetical protein. (147 aa)    
Predicted Functional Partners:
EDM45511.1
Hypothetical protein.
  
     0.559
EDM45476.1
COG4771 Outer membrane receptor for ferrienterochelin and colicins.
       0.503
EDM43085.1
Hypothetical protein.
  
     0.493
EDM43046.1
COG0739 Membrane proteins related to metalloendopeptidases.
  
     0.483
EDM44972.1
Hypothetical protein.
  
     0.476
EDM44764.1
Hypothetical protein.
  
     0.446
EDM44374.1
Hypothetical protein.
  
     0.442
EDM44690.1
COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
  
     0.432
EDM43076.1
Hypothetical protein.
  
     0.427
EDM43131.1
Hypothetical protein; COG2971 Predicted N-acetylglucosamine kinase.
  
     0.426
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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