STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45477.1Peptidase, M23/M37 family protein; COG0739 Membrane proteins related to metalloendopeptidases. (407 aa)    
Predicted Functional Partners:
EDM43046.1
COG0739 Membrane proteins related to metalloendopeptidases.
  
     0.717
EDM45478.1
COG3483 Tryptophan 2,3-dioxygenase (vermilion).
       0.645
EDM45479.1
Hypothetical protein.
       0.645
EDM45476.1
COG4771 Outer membrane receptor for ferrienterochelin and colicins.
       0.500
uppP
Putative bacitracin resistance protein; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
      0.498
EDM45346.1
Peptidoglycan-binding LysM; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
 
  
 0.490
EDM45259.1
COG1664 Integral membrane protein CcmA involved in cell shape determination.
 
     0.482
EDM45417.1
COG5009 Membrane carboxypeptidase/penicillin-binding protein.
  
     0.435
EDM45609.1
Hypothetical protein.
  
     0.409
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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