EDM45489.1 protein (unidentified eubacterium SCB49)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EDM45489.1

Succinylglutamate desuccinylase/aspartoacylase; COG3608 Predicted deacylase. (330 aa)

Predicted Functional Partners:

EDM45487.1

0.938

EDM45488.1

0.937

EDM45486.1

0.863

EDM45490.1

0.805

EDM45531.1

0.630

EDM45491.1

0.618

EDM45492.1

0.618

EDM43969.1

0.551

EDM44999.1

0.547

EDM45000.1

0.547

Your Current Organism:

unidentified eubacterium SCB49

NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDM43969.1	EDM45489.1	SCB49_10277	SCB49_06767	Chloromuconate cycloisomerase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily.	Succinylglutamate desuccinylase/aspartoacylase; COG3608 Predicted deacylase.	0.551
EDM44999.1	EDM45000.1	SCB49_02724	SCB49_02729	COG1294 Cytochrome bd-type quinol oxidase, subunit 2.	COG1271 Cytochrome bd-type quinol oxidase, subunit 1.	0.999
EDM44999.1	EDM45489.1	SCB49_02724	SCB49_06767	COG1294 Cytochrome bd-type quinol oxidase, subunit 2.	Succinylglutamate desuccinylase/aspartoacylase; COG3608 Predicted deacylase.	0.547
EDM45000.1	EDM44999.1	SCB49_02729	SCB49_02724	COG1271 Cytochrome bd-type quinol oxidase, subunit 1.	COG1294 Cytochrome bd-type quinol oxidase, subunit 2.	0.999
EDM45000.1	EDM45489.1	SCB49_02729	SCB49_06767	COG1271 Cytochrome bd-type quinol oxidase, subunit 1.	Succinylglutamate desuccinylase/aspartoacylase; COG3608 Predicted deacylase.	0.547
EDM45486.1	EDM45487.1	SCB49_06752	SCB49_06757	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	COG4067 Uncharacterized protein conserved in archaea.	0.897
EDM45486.1	EDM45488.1	SCB49_06752	SCB49_06762	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	0.560
EDM45486.1	EDM45489.1	SCB49_06752	SCB49_06767	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	Succinylglutamate desuccinylase/aspartoacylase; COG3608 Predicted deacylase.	0.863
EDM45486.1	EDM45490.1	SCB49_06752	SCB49_06772	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	COG0212 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	0.536
EDM45486.1	EDM45491.1	SCB49_06752	SCB49_06777	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	Hypothetical protein.	0.438
EDM45486.1	EDM45492.1	SCB49_06752	SCB49_06782	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	Hypothetical protein.	0.438
EDM45487.1	EDM45486.1	SCB49_06757	SCB49_06752	COG4067 Uncharacterized protein conserved in archaea.	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	0.897
EDM45487.1	EDM45488.1	SCB49_06757	SCB49_06762	COG4067 Uncharacterized protein conserved in archaea.	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	0.944
EDM45487.1	EDM45489.1	SCB49_06757	SCB49_06767	COG4067 Uncharacterized protein conserved in archaea.	Succinylglutamate desuccinylase/aspartoacylase; COG3608 Predicted deacylase.	0.938
EDM45487.1	EDM45490.1	SCB49_06757	SCB49_06772	COG4067 Uncharacterized protein conserved in archaea.	COG0212 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.	0.775
EDM45487.1	EDM45491.1	SCB49_06757	SCB49_06777	COG4067 Uncharacterized protein conserved in archaea.	Hypothetical protein.	0.593
EDM45487.1	EDM45492.1	SCB49_06757	SCB49_06782	COG4067 Uncharacterized protein conserved in archaea.	Hypothetical protein.	0.593
EDM45488.1	EDM45486.1	SCB49_06762	SCB49_06752	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	0.560
EDM45488.1	EDM45487.1	SCB49_06762	SCB49_06757	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	COG4067 Uncharacterized protein conserved in archaea.	0.944
EDM45488.1	EDM45489.1	SCB49_06762	SCB49_06767	COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.	Succinylglutamate desuccinylase/aspartoacylase; COG3608 Predicted deacylase.	0.937