STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45506.1CHU large protein; uncharacterized. (1567 aa)    
Predicted Functional Partners:
EDM45509.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
 
  0.774
EDM44652.1
Probable extracellular nuclease; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
  
  0.757
EDM45508.1
Hypothetical protein; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
 
     0.743
EDM43026.1
Hypothetical protein.
  
     0.702
EDM44214.1
COG5651 PPE-repeat proteins.
  
     0.695
EDM45507.1
CHU large protein; mannosidase-related protein.
 
    
0.652
EDM42938.1
Thermophilic serine proteinase; COG1404 Subtilisin-like serine proteases.
  
 
  0.644
EDM45142.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.601
EDM44507.1
Hypothetical secreted protein.
  
  
  0.597
EDM43134.1
Peptidase S8 and S53, subtilisin, kexin, sedolisin; COG1404 Subtilisin-like serine proteases.
  
  
  0.572
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
Server load: low (18%) [HD]