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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45536.1OmpA/MotB; COG0419 ATPase involved in DNA repair. (276 aa)    
Predicted Functional Partners:
EDM45535.1
Hypothetical protein; COG1100 GTPase SAR1 and related small G proteins.
 
     0.892
EDM45537.1
Fructose-1,6-bisphosphatase; COG0576 Molecular chaperone GrpE (heat shock protein).
       0.753
EDM43245.1
COG3237 Uncharacterized protein conserved in bacteria; Belongs to the UPF0337 (CsbD) family.
  
  
 0.704
EDM44030.1
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
    0.667
EDM44347.1
Hypothetical protein.
  
     0.629
EDM45534.1
Hybrid sensory kinase; COG0642 Signal transduction histidine kinase.
 
     0.604
fbp
COG0158 Fructose-1,6-bisphosphatase; Belongs to the FBPase class 1 family.
       0.572
EDM44349.1
Hypothetical protein.
  
     0.560
EDM42808.1
Thrombospondin type 3 repeat family protein/Calx-beta domain protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.427
EDM45539.1
GCN5-related N-acetyltransferase; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.419
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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