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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45553.1Hypothetical protein; COG0457 FOG: TPR repeat. (593 aa)    
Predicted Functional Partners:
EDM45340.1
Hypothetical protein.
 
     0.775
EDM44075.1
Hypothetical protein.
  
     0.774
EDM44557.1
Hypothetical protein; COG2730 Endoglucanase.
  
     0.774
EDM43690.1
Hypothetical protein; COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain).
  
    0.770
EDM43916.1
Hypothetical protein.
  
     0.768
EDM43072.1
Hypothetical protein.
  
     0.768
EDM45247.1
Hypothetical protein.
  
     0.707
EDM45258.1
Gliding motility-related protein; COG0457 FOG: TPR repeat.
  
   0.693
EDM45273.1
Hypothetical protein.
 
    0.660
ribB
Bifunctional protein: GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.648
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.