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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45556.1Gamma-glutamyl carboxylase-like protein. (457 aa)    
Predicted Functional Partners:
EDM45557.1
Bifunctional protein: riboflavin kinase; COG0196 FAD synthase; Belongs to the ribF family.
       0.791
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.776
EDM45555.1
Hypothetical protein.
       0.773
EDM43546.1
COG1087 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.680
EDM44026.1
Hypothetical protein.
  
 
 0.649
EDM45535.1
Hypothetical protein; COG1100 GTPase SAR1 and related small G proteins.
    
 0.600
EDM44646.1
Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators.
  
  
 0.594
EDM43253.1
Oxidoreductase, Gfo/Idh/MocA family protein; COG0673 Predicted dehydrogenases and related proteins.
     
 0.578
rplY
50S ribosomal protein L25/general stress protein Ctc; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
     
 0.572
EDM43221.1
Outer membrane protein; COG2831 Hemolysin activation/secretion protein.
  
     0.572
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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