Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45566.1Hypothetical protein. (162 aa)    
Predicted Functional Partners:
EDM45567.1
Putative Oxidoreductase, FAD-binding protein; COG3182 Uncharacterized iron-regulated membrane protein.
 
     0.957
EDM45565.1
Hypothetical protein; COG0666 FOG: Ankyrin repeat.
 
     0.955
EDM45564.1
Hypothetical protein.
 
     0.950
EDM45562.1
Hypothetical protein.
 
     0.785
EDM45563.1
Hypothetical protein.
       0.773
EDM45568.1
Hypothetical protein; COG0542 ATPases with chaperone activity, ATP-binding subunit.
       0.757
EDM45561.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.738
EDM43574.1
Hypothetical protein; COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor).
  
     0.523
EDM43575.1
Hypothetical protein.
  
     0.492
EDM43576.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.481
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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