STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45590.1Hypothetical protein. (83 aa)    
Predicted Functional Partners:
EDM45591.1
COG0038 Chloride channel protein EriC.
       0.781
EDM43524.1
Fructose-6-phosphate aldolase 2; COG1225 Peroxiredoxin.
  
     0.713
EDM44527.1
Hypothetical protein; COG1061 DNA or RNA helicases of superfamily II.
  
     0.649
aspS
aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.642
valS
valyl-tRNA synthetase; COG4281 Acyl-CoA-binding protein.
  
     0.636
EDM44886.1
Hypothetical protein.
  
     0.635
EDM44304.1
COG2819 Predicted hydrolase of the alpha/beta superfamily.
  
     0.632
EDM43042.1
Hypothetical protein.
  
     0.626
EDM44023.1
Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.619
EDM45055.1
Hypothetical protein.
  
     0.597
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.