STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kgdAlpha-ketoglutarate decarboxylase. (176 aa)    
Predicted Functional Partners:
EDM43161.1
Hypothetical protein.
  
     0.725
EDM45130.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.697
EDM43045.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.654
EDM45658.1
Hypothetical protein; COG0018 Arginyl-tRNA synthetase.
  
     0.636
EDM43913.1
COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.616
EDM45599.1
COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes.
       0.598
EDM43724.1
Hypothetical protein.
  
     0.552
EDM43530.1
Hypothetical protein.
  
     0.530
EDM43305.1
Hypothetical protein; COG1193 Mismatch repair ATPase (MutS family).
  
     0.517
EDM43358.1
Hypothetical protein.
  
     0.470
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.