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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45612.1Hypothetical protein. (201 aa)    
Predicted Functional Partners:
EDM45613.1
RNA polymerase, sigma-54 factor; COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog.
       0.792
EDM43424.1
Hypothetical protein; COG2388 Predicted acetyltransferase.
  
     0.723
EDM44269.1
COG2124 Cytochrome P450.
    
  0.705
EDM43660.1
Hypothetical protein.
  
     0.695
EDM43948.1
Hypothetical protein.
  
     0.684
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.681
EDM44037.1
Hypothetical protein.
  
     0.648
EDM44304.1
COG2819 Predicted hydrolase of the alpha/beta superfamily.
  
     0.646
EDM43971.1
Putative O-succinylbenzoate--CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.645
EDM44499.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.645
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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