Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45616.1Hypothetical protein. (408 aa)    
Predicted Functional Partners:
EDM43271.1
TPR repeat protein; COG4105 DNA uptake lipoprotein.
  
  0.843
EDM44310.1
Hypothetical protein.
  
 
   0.785
EDM43883.1
Hypothetical protein.
  
  0.782
EDM45583.1
Outer membrane lipoprotein, putative; COG3210 Large exoproteins involved in heme utilization or adhesion.
   
  0.749
EDM44882.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.731
EDM45272.1
TPR-repeat-containing protein; COG0457 FOG: TPR repeat.
  
     0.714
EDM44392.1
COG3047 Outer membrane protein W.
  
     0.708
EDM43076.1
Hypothetical protein.
 
  
  0.693
EDM44304.1
COG2819 Predicted hydrolase of the alpha/beta superfamily.
  
     0.682
EDM44185.1
COG0457 FOG: TPR repeat.
  
     0.681
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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