Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EDM42916.1 | EDM43258.1 | SCB49_11487 | SCB49_00847 | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | COG2176 DNA polymerase III, alpha subunit (gram-positive type). | 0.789 |
| EDM42916.1 | EDM43491.1 | SCB49_11487 | SCB49_00540 | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | COG0210 Superfamily I DNA and RNA helicases. | 0.848 |
| EDM42916.1 | EDM45275.1 | SCB49_11487 | SCB49_05697 | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | COG0608 Single-stranded DNA-specific exonuclease. | 0.424 |
| EDM42916.1 | polA | SCB49_11487 | SCB49_04675 | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.717 |
| EDM42916.1 | radA | SCB49_11487 | SCB49_07437 | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.574 |
| EDM42916.1 | recA | SCB49_11487 | SCB49_06647 | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | DNA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.423 |
| EDM43258.1 | EDM42916.1 | SCB49_00847 | SCB49_11487 | COG2176 DNA polymerase III, alpha subunit (gram-positive type). | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.789 |
| EDM43258.1 | EDM43491.1 | SCB49_00847 | SCB49_00540 | COG2176 DNA polymerase III, alpha subunit (gram-positive type). | COG0210 Superfamily I DNA and RNA helicases. | 0.859 |
| EDM43258.1 | EDM45275.1 | SCB49_00847 | SCB49_05697 | COG2176 DNA polymerase III, alpha subunit (gram-positive type). | COG0608 Single-stranded DNA-specific exonuclease. | 0.424 |
| EDM43258.1 | polA | SCB49_00847 | SCB49_04675 | COG2176 DNA polymerase III, alpha subunit (gram-positive type). | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.717 |
| EDM43258.1 | radA | SCB49_00847 | SCB49_07437 | COG2176 DNA polymerase III, alpha subunit (gram-positive type). | DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.514 |
| EDM43258.1 | recA | SCB49_00847 | SCB49_06647 | COG2176 DNA polymerase III, alpha subunit (gram-positive type). | DNA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.423 |
| EDM43491.1 | EDM42916.1 | SCB49_00540 | SCB49_11487 | COG0210 Superfamily I DNA and RNA helicases. | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.848 |
| EDM43491.1 | EDM43258.1 | SCB49_00540 | SCB49_00847 | COG0210 Superfamily I DNA and RNA helicases. | COG2176 DNA polymerase III, alpha subunit (gram-positive type). | 0.859 |
| EDM43491.1 | polA | SCB49_00540 | SCB49_04675 | COG0210 Superfamily I DNA and RNA helicases. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.807 |
| EDM43491.1 | radA | SCB49_00540 | SCB49_07437 | COG0210 Superfamily I DNA and RNA helicases. | DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.740 |
| EDM43491.1 | recA | SCB49_00540 | SCB49_06647 | COG0210 Superfamily I DNA and RNA helicases. | DNA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.893 |
| EDM44304.1 | radA | SCB49_04725 | SCB49_07437 | COG2819 Predicted hydrolase of the alpha/beta superfamily. | DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.657 |
| EDM45275.1 | EDM42916.1 | SCB49_05697 | SCB49_11487 | COG0608 Single-stranded DNA-specific exonuclease. | COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.424 |
| EDM45275.1 | EDM43258.1 | SCB49_05697 | SCB49_00847 | COG0608 Single-stranded DNA-specific exonuclease. | COG2176 DNA polymerase III, alpha subunit (gram-positive type). | 0.424 |
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