STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45664.1Membrane fusion efflux protein, putative; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (426 aa)    
Predicted Functional Partners:
EDM45665.1
COG1538 Outer membrane protein.
 
  0.991
EDM43465.1
ABC transporter permease protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
  0.907
EDM45029.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
 
  0.905
EDM43392.1
COG1538 Outer membrane protein.
   
  0.902
EDM44968.1
COG1538 Outer membrane protein.
   
  0.902
EDM44993.1
Outer membrane efflux family protein, putative; COG1538 Outer membrane protein.
   
  0.902
EDM45595.1
COG1538 Outer membrane protein.
   
  0.902
EDM45666.1
Methyl-accepting chemotaxis sensory transducer; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 
0.893
EDM44138.1
Putative outer membrane lipoprotein precursor; COG1538 Outer membrane protein.
  
  0.886
EDM43390.1
HlyB/MsbA family ABC transporter; COG1132 ABC-type multidrug transport system, ATPase and permease components.
  
 0.842
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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