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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45678.1Hypothetical protein. (147 aa)    
Predicted Functional Partners:
EDM45679.1
COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
 
  
  0.932
ctaB
Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
  
  0.855
EDM45680.1
COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
 
  
  0.850
EDM45673.1
Hypothetical protein.
 
     0.818
EDM44274.1
Heme/copper-type cytochrome/quinol oxidase, subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
  
  0.789
EDM43711.1
Hypothetical protein.
  
  
  0.775
EDM43195.1
Hypothetical protein.
  
     0.744
EDM45581.1
COG2849 Uncharacterized protein conserved in bacteria.
  
     0.722
EDM44081.1
Ribonuclease Z.
  
     0.721
EDM43024.1
COG0308 Aminopeptidase N.
  
     0.712
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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