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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45688.1COG2825 Outer membrane protein. (169 aa)    
Predicted Functional Partners:
EDM45690.1
COG4775 Outer membrane protein/protective antigen OMA87.
 
  
 0.887
ppnK
Inorganic polyphosphate/ATP-NAD kinase.
   
   0.752
EDM43780.1
COG4775 Outer membrane protein/protective antigen OMA87.
 
  
 0.717
EDM42828.1
Putative hemin receptor.
  
     0.702
EDM45689.1
Outer membrane protein, ompH family; COG2825 Outer membrane protein.
 
    
0.700
EDM44331.1
Hypothetical protein.
  
     0.698
EDM45053.1
COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
  
 0.674
EDM44364.1
Hypothetical protein; COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog).
  
     0.668
EDM44761.1
Hypothetical protein; COG0296 1,4-alpha-glucan branching enzyme.
  
    0.665
EDM44750.1
Hypothetical protein.
  
     0.657
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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