STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45690.1COG4775 Outer membrane protein/protective antigen OMA87. (860 aa)    
Predicted Functional Partners:
EDM43271.1
TPR repeat protein; COG4105 DNA uptake lipoprotein.
 
 0.989
EDM45691.1
Undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase); Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
  0.973
EDM45058.1
Putative outer membrane protein; COG2067 Long-chain fatty acid transport protein.
  
 
   0.957
EDM45688.1
COG2825 Outer membrane protein.
 
    0.895
EDM45689.1
Outer membrane protein, ompH family; COG2825 Outer membrane protein.
 
    0.886
ppnK
Inorganic polyphosphate/ATP-NAD kinase.
   
   0.848
EDM45583.1
Outer membrane lipoprotein, putative; COG3210 Large exoproteins involved in heme utilization or adhesion.
  
 0.843
EDM43883.1
Hypothetical protein.
  
 0.843
fabZ
Candidate UDP-3-0-acyl N-acetylglucosamine deacetylase, carbohydrate esterase family 11 protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
 
  
 0.806
EDM43164.1
Putative exported peptidyl-prolyl cis-trans isomerase; COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
 
 0.792
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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