Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45704.1Auxin-regulated protein. (504 aa)    
Predicted Functional Partners:
EDM44279.1
Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.747
EDM43659.1
COG1587 Uroporphyrinogen-III synthase.
  
     0.722
EDM42910.1
Hypothetical protein.
  
 
  0.654
EDM43270.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
 
     0.652
EDM45257.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
 0.649
EDM43586.1
phenylacetate-CoA oxygenase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
 0.649
EDM43510.1
Hypothetical protein.
  
     0.646
EDM45224.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.591
EDM44770.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.579
EDM45705.1
Hypothetical protein.
       0.576
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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