STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM45720.1Hypothetical protein. (313 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.682
EDM44647.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
     
 0.517
EDM45717.1
COG0789 Predicted transcriptional regulators.
       0.463
EDM45718.1
Putative peptidase; COG0739 Membrane proteins related to metalloendopeptidases.
  
    0.441
EDM43410.1
Putative iron-related ABC transport periplasmic binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
     0.436
EDM44039.1
Hypothetical protein; COG2317 Zn-dependent carboxypeptidase.
 
     0.417
EDM45716.1
Hypothetical protein.
       0.401
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.