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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45729.1Hypothetical protein; COG0790 FOG: TPR repeat, SEL1 subfamily. (224 aa)    
Predicted Functional Partners:
EDM44935.1
Holliday junction DNA helicase; COG0515 Serine/threonine protein kinase; Belongs to the AAA ATPase family.
 
 
 0.853
EDM43445.1
Hypothetical protein.
    
  0.822
EDM44944.1
Hypothetical protein; COG0465 ATP-dependent Zn proteases.
   
 0.806
EDM43338.1
Hypothetical protein; COG0457 FOG: TPR repeat.
   
 
 0.635
EDM43992.1
Tetratricopeptide repeat family protein; COG0457 FOG: TPR repeat.
   
 0.633
EDM45121.1
Hypothetical protein.
  
 
 0.616
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
   
   0.568
EDM43291.1
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
    
 0.509
EDM45728.1
Hypothetical protein.
       0.505
EDM44934.1
COG0443 Molecular chaperone; Belongs to the heat shock protein 70 family.
 
 
 
 0.493
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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