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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM45752.1Thrombospondin type 3 repeat family protein/Calx-beta domain protein; COG3291 FOG: PKD repeat. (2545 aa)    
Predicted Functional Partners:
EDM44551.1
OmpA domain protein; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
   0.686
EDM42878.1
COG5337 Spore coat assembly protein.
  
    0.558
EDM43539.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
 
  0.526
EDM45509.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
 
  0.513
EDM44535.1
Hypothetical protein.
  
     0.507
EDM43311.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
 
  0.503
EDM42938.1
Thermophilic serine proteinase; COG1404 Subtilisin-like serine proteases.
  
 
   0.495
EDM43315.1
CheA Signal Transduction Histidine Kinases (STHK); COG3210 Large exoproteins involved in heme utilization or adhesion.
  
 
  0.478
EDM44975.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.467
EDM45002.1
TonB dependent receptor, putative; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
   0.458
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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