STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43537.1Thrombospondin type 3 repeat family protein/Calx-beta domain protein; COG2931 RTX toxins and related Ca2+-binding proteins. (1511 aa)    
Predicted Functional Partners:
EDM44551.1
OmpA domain protein; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
 
  0.805
EDM43539.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
 
  0.785
EDM43538.1
Hypothetical protein.
 
     0.757
EDM42878.1
COG5337 Spore coat assembly protein.
  
    0.684
EDM44507.1
Hypothetical secreted protein.
  
  
  0.638
EDM44030.1
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
 
  0.603
EDM45509.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
  
  0.571
EDM43466.1
Hypothetical protein; COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases.
  
 
  0.556
EDM44535.1
Hypothetical protein.
  
     0.545
EDM43311.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
  
  0.541
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.