Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43567.1Hypothetical protein. (820 aa)    
Predicted Functional Partners:
EDM42818.1
CHU large protein; COG3188 P pilus assembly protein, porin PapC.
  
 
   0.674
EDM42829.1
CHU large protein; COG3188 P pilus assembly protein, porin PapC.
  
 
   0.672
EDM44053.1
Hypothetical protein.
  
     0.654
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
       0.650
EDM44984.1
Hypothetical protein.
 
     0.649
EDM45658.1
Hypothetical protein; COG0018 Arginyl-tRNA synthetase.
  
     0.643
EDM45258.1
Gliding motility-related protein; COG0457 FOG: TPR repeat.
  
     0.626
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
     
  0.601
EDM44209.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.557
EDM43565.1
Pyruvate dehydrogenase E1 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
      0.536
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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