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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43574.1Hypothetical protein; COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor). (275 aa)    
Predicted Functional Partners:
EDM43576.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.868
EDM43150.1
Hypothetical protein.
  
     0.693
EDM43575.1
Hypothetical protein.
 
    
0.565
EDM43573.1
Hypothetical protein.
 
     0.557
EDM45434.1
Hypothetical protein.
  
     0.544
EDM45566.1
Hypothetical protein.
  
     0.523
gltX
glutamyl-tRNA synthetase; COG0477 Permeases of the major facilitator superfamily.
  
     0.502
EDM45567.1
Putative Oxidoreductase, FAD-binding protein; COG3182 Uncharacterized iron-regulated membrane protein.
  
     0.472
EDM45565.1
Hypothetical protein; COG0666 FOG: Ankyrin repeat.
  
     0.460
EDM45130.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.432
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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