Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43592.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
EDM43594.1
S23 ribosomal.
 
     0.861
EDM43593.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
       0.773
EDM43595.1
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
     0.717
EDM43591.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
       0.613
EDM43602.1
Hypothetical protein; COG2827 Predicted endonuclease containing a URI domain.
 
     0.575
EDM43600.1
Hypothetical protein.
 
     0.554
EDM44988.1
Hypothetical protein.
  
     0.458
EDM44648.1
Hypothetical protein.
  
     0.456
EDM43590.1
Ring-hydroxylation complex protein 3; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
       0.436
EDM43596.1
Beta-ketoadipyl CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.425
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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